rs27037160 SNP Detail

Summary

• ID
  rs27037160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102834273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACCTGT GTCAACCATA
  GACACGGAGG TAGCTGTGGG CAACTCAGCA GCCTAGATCA CTTTCCCCAG GCTCCTCCTC
  CTAAGCACTA GGACCAGGAG CCATCAGATT GGGAGTGTTG ACTCAAAGCT ATCCCGTGGA
  TGTGCAGTGG ACTGCACACA AGGGTCCTTA GGCACTAGGC ATGTGGCTGA CAATCCCTTT
  Y
  TCTACTCATC CTGTCCAGGG AAGGACCAAA GCACAGATCG GAAACCCCTC TGCAAGCAGG
  AAAGTAGGAA CTCAAAACCT ACGGAGGCCT CTGATCCTGA AGGCACTGAA CGTGGAAGGT
  TCTCCCCTCG GCCCCCACGC ACTCTGCAGC CCGGCCATTC TTATCCTCTG CCTAGTTAAA
  TGGCTTCATA CCTCTAAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37279100	NES08553584	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27037160					SNP	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37279100	NES08553584	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102834273 () rs orientation: forward

Symbol	Name	Function Class
C1ql1	complement component 1, q subcomponent-like 1	within coordinates
Cpgi3944	CpG island 3944	1827 bp proximal