rs27037889 SNP Detail

Summary

• ID
  rs27037889
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96681335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAGTTG GGAGGCTGTG
  GAAGAACACG TGTAAGGCAA GACTCATCCA ATGAAAGAGA TCTGTTCTTT GTGCGTAAGC
  CTGGGGGCCT CAGTTTACCT CTCAGGATCC AGGTAAAGGT GGAAAGAGCG AGCAGACTTC
  ACAGAATTGC CCTCTGAGCT ACAAATTAGG GAAATGGCAG GGACCCTCGA AAGCAGGTGC
  W
  TGCCCACCGG CAGCGAGAAT ATTTTTATTT AAAAAGCAGT ATAGAAATAT AGAACTCATT
  TCGGTGTGTG GTACTGAGGA CCTTGCACAC ATGTAAGTTA TCTACCACTG AGTTATGTTC
  CAATACCATA AAAAGGTTTT TTGAAAAATG AGTTATGCTA GAACATAGGG TAACCTCTCC
  AGTTTTGTGT TAAGAATCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37293911	NES08562502	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	A	A	A		T	T
ss132687363	ENSMUSSNP3752814	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T			A
ss323822808	CHEV_11_96651823	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27037889					SNP	A	A	T	A	A	A	A	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37293911	NES08562502	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96681335 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			Intron
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			698 bp distal
Rr455508	regulatory region 455508			1250 bp distal
Rr455509	regulatory region 455509			66 bp distal
Rr455510	regulatory region 455510			204 bp proximal
Rr455511	regulatory region 455511			1003 bp proximal
Tssr104569	transcription start site region 104569			1363 bp downstream
Tssr104570	transcription start site region 104570			1303 bp downstream
Tssr104571	transcription start site region 104571			1285 bp downstream
Tssr104572	transcription start site region 104572			1255 bp downstream
Tssr110346	transcription start site region 110346			1501 bp upstream