rs27037890 SNP Detail

Summary

• ID
  rs27037890
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96681153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCCACTG CACAGGCCTG
  AATTCAATCC TCTGTACCTT ATAAATTCGG GCTGGGCTTG ATGGCATTCA TGTAGCCCTT
  GGGAGCGGAA ACAGGACGAT CAGGAGTTTA AAGCCTTGCC TGGCCACCAG GGGAGTCAAG
  AAAGGGTGAA AAGGCCACTT TGTGCCTTGT AATGGGTCTT CAGTGTGAGT TGGGAGGCTG
  W
  GGAAGAACAC GTGTAAGGCA AGACTCATCC AATGAAAGAG ATCTGTTCTT TGTGCGTAAG
  CCTGGGGGCC TCAGTTTACC TCTCAGGATC CAGGTAAAGG TGGAAAGAGC GAGCAGACTT
  CACAGAATTG CCCTCTGAGC TACAAATTAG GGAAATGGCA GGGACCCTCG AAAGCAGGTG
  CATGCCCACC GGCAGCGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37293912	NES08562507	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27037890					SNP	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37293912	NES08562507	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96681153 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			Intron
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			516 bp distal
Rr455508	regulatory region 455508			1068 bp distal
Rr455509	regulatory region 455509			within coordinates
Rr455510	regulatory region 455510			386 bp proximal
Rr455511	regulatory region 455511			1185 bp proximal
Tssr104569	transcription start site region 104569			1181 bp downstream
Tssr104570	transcription start site region 104570			1121 bp downstream
Tssr104571	transcription start site region 104571			1103 bp downstream
Tssr104572	transcription start site region 104572			1073 bp downstream
Tssr110346	transcription start site region 110346			1319 bp upstream