rs27037895 SNP Detail

Summary

• ID
  rs27037895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96680386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGGGCTG GAGGCGGGGT
  GTGTGGGGGG AGGGGACGCG GCAACGGCGG GAGGCCGCGG ACCAGCGCGG GCCGCTAACG
  GAAGAGCGGA GACCGAGGAA TGGGGGGCGC GCCCCGGCCC AGCGCCCGCC GGGTCCGCTT
  CCCGCGCAGA GCTCGCGGGT TGCGGGAGTG TGGAGAGGGC GGGGCAGCGA ATCCAGAGCC
  Y
  GGGAGCCGAG TGGTTCGCGA TGAGCGGAGC CAGCGGAGGG TTAGCTTTTC AAGAACTGGA
  CCAAGAGCGT TTGACCCGAG TGAGGGACTC TAGAGTTGGG CGGGAGAAAG AAAACTTTGG
  GACGTCCATA AGGGGGACAG GTGCTTTTGG GTGTGCGTGG CAGGGACCAC GACTTCGTAC
  TCTCGAGGTT TAGAAATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37293917	NES08562519	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27037895					SNP	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37293917	NES08562519	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96680386 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			Intron
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			within coordinates
Rr455508	regulatory region 455508			301 bp distal
Rr455509	regulatory region 455509			within coordinates
Rr455510	regulatory region 455510			1153 bp proximal
Rr455511	regulatory region 455511			1952 bp proximal
Tssr104569	transcription start site region 104569			414 bp downstream
Tssr104570	transcription start site region 104570			354 bp downstream
Tssr104571	transcription start site region 104571			336 bp downstream
Tssr104572	transcription start site region 104572			306 bp downstream
Tssr110346	transcription start site region 110346			552 bp upstream