rs27037896 SNP Detail

Summary

• ID
  rs27037896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96680345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGATTCCTC TCGGACTCTC
  GGGCGCTGCT ACGAGGTGAA GAGGCGGGCT GGAGGCGGGG TGTGTGGGGG GAGGGGACGC
  GGCAACGGCG GGAGGCCGCG GACCAGCGCG GGCCGCTAAC GGAAGAGCGG AGACCGAGGA
  ATGGGGGGCG CGCCCCGGCC CAGCGCCCGC CGGGTCCGCT TCCCGCGCAG AGCTCGCGGG
  Y
  TGCGGGAGTG TGGAGAGGGC GGGGCAGCGA ATCCAGAGCC CGGGAGCCGA GTGGTTCGCG
  ATGAGCGGAG CCAGCGGAGG GTTAGCTTTT CAAGAACTGG ACCAAGAGCG TTTGACCCGA
  GTGAGGGACT CTAGAGTTGG GCGGGAGAAA GAAAACTTTG GGACGTCCAT AAGGGGGACA
  GGTGCTTTTG GGTGTGCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37293918	NES08562518	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T		C	C
ss323822802	CHEV_11_96650833	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27037896					SNP	T	T	T	C	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37293918	NES08562518	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96680345 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			Intron
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			within coordinates
Rr455508	regulatory region 455508			260 bp distal
Rr455509	regulatory region 455509			within coordinates
Rr455510	regulatory region 455510			1194 bp proximal
Rr455511	regulatory region 455511			1993 bp proximal
Tssr104569	transcription start site region 104569			373 bp downstream
Tssr104570	transcription start site region 104570			313 bp downstream
Tssr104571	transcription start site region 104571			295 bp downstream
Tssr104572	transcription start site region 104572			265 bp downstream
Tssr110346	transcription start site region 110346			511 bp upstream