rs27037897 SNP Detail

Summary

• ID
  rs27037897
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96679863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTGACA TTTGAAGCAA
  AAAGAAAGGC CACGAGTTCG AAGCCACCTG GGCTGCGTAT CCTGTTATTA AACAAACAAA
  CCCCACCACT ACCCATCAAT TTCCTAGACT GTAGAGTTAT GTTCTAAGTA ACAGTCGACT
  TCGCCTTTCC AGTCAAAAAA GAAAACAAAA CTACGAAAAC TCCCTACAAT CCTTGAAAGT
  S
  GAGGTGGGCG GCGCGGGATT CGCGCGGTAC TTTGGGATCT GTAGTTTCTG GCCGACTCTT
  AATCCCAAGG TGCCCTGCGG CGGGTCGTCG CGTCTGCGCA GTGCAGGCGG CGGGCCGCGC
  AGAGTGAGAG GCTCTTTTGT TCGGCTGAGG GGAGGGCCGT TAGCGGGGCC TGCGGTACGC
  CGCTTCAGCG GGACGGTCGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37293920	NES08562516	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27037897					SNP	G	G	G	C	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37293920	NES08562516	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96679863 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			within coordinates
Rr455508	regulatory region 455508			within coordinates
Rr455509	regulatory region 455509			223 bp proximal
Rr455510	regulatory region 455510			1676 bp proximal
Tssr104569	transcription start site region 104569			81 bp upstream
Tssr104570	transcription start site region 104570			112 bp upstream
Tssr104571	transcription start site region 104571			176 bp upstream
Tssr104572	transcription start site region 104572			198 bp upstream
Tssr110346	transcription start site region 110346			29 bp upstream