rs27037898 SNP Detail

Summary

• ID
  rs27037898
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96679575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAGCA AATTCAGAAA
  GTGTCGATGG TGTCTACCTA GACGGTTAAT CTACTGCTTT CTGAATGGAG CAGTGATTCA
  AACTGAGAGG TAGGAACCCC AGTCAGGTGG CAATAATAGG TAAGATTGCT GGACATTATT
  GAAGGTGATT TGATAAATCT CAGGTGACGA ATACAATATT TTTCTTTTAA ACGCAAACGG
  R
  CCAAACATCA ACGGGCTAGT TTCCAAACCT GCAGTGTCCT ACTTTTGTAG ACTGAGTAAG
  GAATACCAGC ACGCGCCTGG AATCCAGCAC TTTGACATTT GAAGCAAAAA GAAAGGCCAC
  GAGTTCGAAG CCACCTGGGC TGCGTATCCT GTTATTAAAC AAACAAACCC CACCACTACC
  CATCAATTTC CTAGACTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37293921	NES08562539	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27037898					SNP	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37293921	NES08562539	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96679575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			91 bp proximal
Rr455508	regulatory region 455508			within coordinates
Rr455509	regulatory region 455509			511 bp proximal
Rr455510	regulatory region 455510			1964 bp proximal
Tssr104569	transcription start site region 104569			369 bp upstream
Tssr104570	transcription start site region 104570			400 bp upstream
Tssr104571	transcription start site region 104571			464 bp upstream
Tssr104572	transcription start site region 104572			486 bp upstream
Tssr110346	transcription start site region 110346			239 bp downstream