rs27038663 SNP Detail

Summary

• ID
  rs27038663
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105827483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAAGCAG CTTGGAGCAG
  GAACAGTGTG TGTCCAGCAG CAGCTGCTGG AGCCTGAAGC AGCAGGTAGA GAAGGAAACG
  CTGTGTTCAG GAACTCACCC ACCAGGGCGA TGATGAAGGC GAAGACGTGC AGCAGCCCAT
  GCAAGATCTT GGTCGTGCGT TTGGCTTCTC TTCTGAAGAC ACGGTACACC AGCAGAGCTT
  W
  TGGAAAGTGA GAGAAAGATG TAAGAGTGTA GGCCTGTGCT GGACAGCAGA CTATGCTAAG
  AGCTTGTCGG TCGAGGTTTG CCAGGCACAG AAACTGAAGG AGAGATCAGG ATTCCATAAG
  GACCTTGCAC TCATCCTGGT CAGGGTTCCC CTGAGTCCTT CTTCTACCCC ATGCACACCC
  AGGGGCCATG AGAAGAGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37272096	NES08540156	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27038663					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272096	NES08540156	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105827483 () rs orientation: forward

Symbol	Name	Function Class
Cyb561	cytochrome b-561	within coordinates
Rr238672	regulatory region 238672	1718 bp proximal
Rr248093	regulatory region 248093	within coordinates
Tssr111265	transcription start site region 111265	356 bp upstream
Tssr111266	transcription start site region 111266	341 bp upstream
Tssr111267	transcription start site region 111267	315 bp upstream
Tssr111268	transcription start site region 111268	167 bp upstream
Tssr111269	transcription start site region 111269	133 bp upstream
Tssr111270	transcription start site region 111270	247 bp downstream
Tssr111271	transcription start site region 111271	258 bp downstream
Tssr111272	transcription start site region 111272	1187 bp downstream
Tssr111273	transcription start site region 111273	1903 bp downstream