rs27038664 SNP Detail

Summary

• ID
  rs27038664
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105826866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCGGTA GCGGCTCCGC
  AGAGAGAATG AAGCTCCAGG GAACAGGAAG AAGCTGAAAC CCACGAGCCA CTAAAGGGAG
  AGAGGGCTCT GCTGAGCCAT GAGCTGGCTG GGACCTAATA GGAGGCATAG TCGGTGGGTG
  GAATAAAGGA GTCTGGGGTA CCCTGGCCTC TAGAATCTAG ATTCTACCCA GGTCAACCTC
  S
  GAAAACCACC CAACTAAATC CATCTGCTCT TTTCCTTTCT GGACATGCCC CCTGGAGAAT
  GGGCCCCTAC ATGCCACACC TGGACCCCAT TTGCCCTCCC TTTACCTCTC CCAGCCCTTG
  CTGCCACAGC ACTAGACTCA CCTGCACAAA GTACAGAACA AAGACTAAGA TCCCACACCA
  GCTGTGCAAG CTGTACAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37272097	NES08540153	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27038664					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272097	NES08540153	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105826866 () rs orientation: forward

Symbol	Name	Function Class
Cyb561	cytochrome b-561	within coordinates
Rr248093	regulatory region 248093	within coordinates
Tssr111265	transcription start site region 111265	254 bp downstream
Tssr111266	transcription start site region 111266	263 bp downstream
Tssr111267	transcription start site region 111267	287 bp downstream
Tssr111268	transcription start site region 111268	442 bp downstream
Tssr111269	transcription start site region 111269	470 bp downstream
Tssr111270	transcription start site region 111270	864 bp downstream
Tssr111271	transcription start site region 111271	875 bp downstream
Tssr111272	transcription start site region 111272	1804 bp downstream