rs27038753 SNP Detail

Summary

• ID
  rs27038753
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105792511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCCTGG GTCTCTACTC
  AGGAGCCCAT CCCACTGCAA GGGATGCTCC AGTGAAGCAG CAGTCCTCTC AGCTGGCCTT
  AGGGGTCGCC AAGTGAATAT GAAGCAAAAC TGAAATGTGT ATTGTCTGTG GAAAGTCCCT
  TAACTCCTAA TACAATCAGA TTCCTCAAGA CAGCTGTCAC TTTTGTTTGT GGTTTGCAGT
  Y
  ATTCTCCCTC CCAGGCAGTC CTCATACTTC TGAGAGGAAA CAAAACAATT ACTTAAAGGA
  AGTATAGACC TCAGCTTTCT CCACATTCCT TTCCTGTGTG CTTATTGGGC GTCAGACAAG
  AGATTGTGTC ATTGGCTTAA ATAAGAAGAA TATGTCATTT TTAAATCACA TGATATATGG
  AGTATGTTAA ATAAAAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37272186	NES08540865	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	C	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27038753					SNP	T	C	T	T	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272186	NES08540865	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105792511 () rs orientation: forward

Symbol	Name	Function Class
Gm53650	predicted gene, 53650	within coordinates
Rr231188	regulatory region 231188	111 bp distal
Rr238670	regulatory region 238670	within coordinates
Rr238671	regulatory region 238671	290 bp proximal
Rr386628	regulatory region 386628	1059 bp downstream
Tanc2	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	within coordinates
Tssr105455	transcription start site region 105455	211 bp upstream
Tssr105456	transcription start site region 105456	287 bp upstream