rs27038758 SNP Detail

Summary

• ID
  rs27038758
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105788608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGGGTAA TTTAATTTCA
  AAATACTAGT AAAAGAAAAA CCACTGGCTT CACAAATGTA GGCCACCAAG GAAAAATTGT
  AGCCTCGTGG TATTTTGATT CTGTCATGAA AACTAAGAAT CACACAGGGA AATCTAAGTA
  ATATATGGGA CCTCATTTTG AGATGTTCAG TATTATCACC AGGGAAGCAA GGAAAACTCC
  Y
  AAGACTCCTC ACTCCTTGAG GAAGTGAGAC CTGGGTTCTC AGCAGAATCA CAGAGCCTTA
  GATGCCATTG TGACACAGAT GGCCCACCTA TATCAATGTC TCCTTTGATT GAATAGATGC
  TCCTAGTAAC AGCCTATCTG GTCCTGATAG TACTCTTGAT GTAATTTACA TCCAACTGGG
  TCCTTGAATC ATCTCTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37272191	NES08540913	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27038758					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272191	NES08540913	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105788608 () rs orientation: forward

Symbol	Name	Function Class
Gm53650	predicted gene, 53650	within coordinates
Rr231187	regulatory region 231187	193 bp proximal
Rr386628	regulatory region 386628	1013 bp upstream
Tanc2	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	within coordinates