rs27038759 SNP Detail

Summary

• ID
  rs27038759
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105787988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTACTAAA CACAGAAGAA
  GACAAACAAA AATCTAGAAA AGAAGCAAGA GCCAAAGAGA CTGCAGTGAG AGGTCTGAAC
  TGAACAGCGC TCCCTCAGAC TTTCATGTTT AAAAAGAAAC CTTAGGCACG GAGATGAAAA
  AGTTCCTTGA GATTTGGAGA AAAATGCACT CAGACTGACC AAGGGCACCC TACATGTTTA
  K
  TAGCACAGTT CAGTTCTCTG AAAGCATTTC CAAATGTTTT ATTGCTTTTG ATGTGGTGTT
  AGGGAATGCA TGCATATGAA TGTATAGGTG CATGTACACA GGTGCACAAA TGTAGAAACC
  GACTGGAGCA GGATGCTGGT GCTGTCTTCT AACTTTCTCC TTACTTTCTT GCCTTAAGAA
  GAAATCTCTC ATTGAACCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37272192	NES08540941	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27038759					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272192	NES08540941	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105787988 () rs orientation: forward

Symbol	Name	Function Class
Gm53650	predicted gene, 53650	within coordinates
Rr231187	regulatory region 231187	813 bp proximal
Rr386628	regulatory region 386628	1633 bp upstream
Tanc2	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	within coordinates