rs27038762 SNP Detail

Summary

• ID
  rs27038762
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105787700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGTGTTG CTGTGCAAGA
  AACGGGCCAA GGTAGCCACT GCTTACTCCT GCTGCTTTTC TTCTTCTCTT TCTCTTGCCT
  CCCAATGTAG TATTCTAACT CATTTGTTAC CTTGACGATC TAGCTGCACC CAACCCAGAT
  GCAGAGCAGA TACAAGGGAA GACCCACTGA GCCCATATCC TAGAGTTAGC CTGCTGCATC
  W
  GGATACAATT TTAAAATCTT TGAGAGGCAC CCGTAAAACA ACATTTGTCA ACAACCACAA
  AAATTCCTAC CTAATAACCC AGAAGTTATC TACTAAACAC AGAAGAAGAC AAACAAAAAT
  CTAGAAAAGA AGCAAGAGCC AAAGAGACTG CAGTGAGAGG TCTGAACTGA ACAGCGCTCC
  CTCAGACTTT CATGTTTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37272195	NES08540938	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	A	A		A	A	A	A	A	A	A	T
ss38839780	mCV22594331	ABI	CRAMUS_MOUSE	f	SNP		A	T					A
ss132765598	ENSMUSSNP3485166	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27038762					SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272195	NES08540938	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105787700 () rs orientation: forward

Symbol	Name	Function Class
Gm53650	predicted gene, 53650	within coordinates
Rr386628	regulatory region 386628	1921 bp upstream
Tanc2	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	within coordinates