rs27038764 SNP Detail

Summary

• ID
  rs27038764
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105787685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTTCCTG AGCATCGTGG
  TGTTGCTGTG CAAGAAACGG GCCAAGGTAG CCACTGCTTA CTCCTGCTGC TTTTCTTCTT
  CTCTTTCTCT TGCCTCCCAA TGTAGTATTC TAACTCATTT GTTACCTTGA CGATCTAGCT
  GCACCCAACC CAGATGCAGA GCAGATACAA GGGAAGACCC ACTGAGCCCA TATCCTAGAG
  Y
  TAGCCTGCTG CATCAGGATA CAATTTTAAA ATCTTTGAGA GGCACCCGTA AAACAACATT
  TGTCAACAAC CACAAAAATT CCTACCTAAT AACCCAGAAG TTATCTACTA AACACAGAAG
  AAGACAAACA AAAATCTAGA AAAGAAGCAA GAGCCAAAGA GACTGCAGTG AGAGGTCTGA
  ACTGAACAGC GCTCCCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37272197	NES08540936	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		T	T	T	T	T	T	T	T	C
ss38827693	mCV22594330	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss132765594	ENSMUSSNP441736	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27038764					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37272197	NES08540936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105787685 () rs orientation: forward

Symbol	Name	Function Class
Gm53650	predicted gene, 53650	within coordinates
Rr231187	regulatory region 231187	1116 bp proximal
Rr386628	regulatory region 386628	1936 bp upstream
Tanc2	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	within coordinates