rs27039932 SNP Detail

Summary

• ID
  rs27039932
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106676619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTCGTG TGTTGGGAAT
  TAGAATTCAG GTGGTCATAA GACTTTTTTT TGAGACAGTG TCTCCTGAAT TCTCCAGTTT
  CTACCTCCCA GGCACTATTC TCAGGATAAA ATTTTTGTGT GTGGAAGCAC ATGGAGAAAC
  CAGAAGGCAA CTTTTGCAAG TTGGTCTCTC CTTGTGGTAG TTGATCTTGA TCAGGCTCAT
  R
  ACAAGTATCT ATAATTGGCT GATCCAACTA ACTGTCTTTG GATACTAATT TTTTCCCCCC
  GAGATAGGGT TTCTTTGTGT AGCTCTGGCT GTCCTGGAAC TCAGAAATCC ACCTGCCTCT
  GCCTCCCCAG TGCTGTGATT AAAGGTGTGT GCCACCACGC CTGGGCTGGA TACTAATTTT
  AAGTGGCTAG TTTATACTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37270168	NES08538875	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27039932					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37270168	NES08538875	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106676619 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4028	CpG island 4028	1502 bp proximal
Ddx5	DEAD box helicase 5	within coordinates
Gm72901	predicted gene, 72901	1902 bp upstream
Rr245998	regulatory region 245998	within coordinates
Rr369404	regulatory region 369404	1113 bp upstream
Tssr105555	transcription start site region 105555	1895 bp upstream
Tssr111405	transcription start site region 111405	1824 bp upstream
Tssr111406	transcription start site region 111406	925 bp downstream
Tssr111407	transcription start site region 111407	1752 bp downstream