rs27039933 SNP Detail

Summary

• ID
  rs27039933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106675544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCACTAAG CCACCACACA TACAGATTTT CAGGTGTATC
  ACTTTATGCG TGCTTGTGTA GTGACTAGGT TCAAAAACTA TGAGTGTTTT CCTCATGCAA
  R
  CCAAGCAAGT TCTTCATATC ACACCAAGCC ATATCACCAA CAAATGGACT TTTAAAAGAA
  CATATAGCAC ACTACCTTAA TTTTATTTTG AGACAATTTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37270169	NES08538873	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27039933					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37270169	NES08538873	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106675544 () rs orientation: forward

Symbol	Name	Function Class
Ddx5	DEAD box helicase 5	within coordinates
Gm56260	predicted gene, 56260	1447 bp upstream
Mir3064	microRNA 3064	1959 bp upstream
Rr245998	regulatory region 245998	1056 bp proximal
Tssr111401	transcription start site region 111401	1853 bp upstream
Tssr111402	transcription start site region 111402	1834 bp upstream
Tssr111403	transcription start site region 111403	1764 bp upstream
Tssr111404	transcription start site region 111404	1356 bp upstream
Tssr111405	transcription start site region 111405	749 bp upstream
Tssr111406	transcription start site region 111406	2000 bp downstream