rs27040526 SNP Detail

Summary

• ID
  rs27040526
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102248586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCTAAGG ATGAGCTTTG
  GGGAAACAGG CACCCTGGGT GGGGTAGAAG GAGCTAAAGT ATCCCTGGTG GGCTAGGCAT
  ACCACACAGC AGAGCGGGCC AGCTAGAACC AGGTCACAGC GGGCCAGGAT GGACCAGCTG
  GTCCAATCTA AGTCAGGGTA AGACTAGACT GGCCAGGAAC AGGTGGAGTT CAACCCACTG
  S
  ATCCAAATAG TGAATCTAAA GTCAAGCCAG TCCAGGGTGG GAAACCTGGC CTCTTCTGTC
  CTCCCACAAG CTCCCTGGGG ATAAAACCTG ACCTCTTCTG TCCACAAGCT CCTTGGCTAA
  CCAGCCACAT CTCCCTCCAT CCCCCCAGCC CTCCACACTC ACTCTTTCTG TCATGAGAGT
  TGCTGCAGCC CTGCCCAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37280183	NES08547061	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27040526					SNP	C	C	C	C	C	C	G	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280183	NES08547061	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102248586 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	within coordinates
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111049	transcription start site region 111049	1618 bp upstream
Tssr111050	transcription start site region 111050	1568 bp upstream
Tssr111051	transcription start site region 111051	1520 bp upstream
Tssr111052	transcription start site region 111052	1310 bp upstream
Tssr111053	transcription start site region 111053	1254 bp upstream
Tssr111054	transcription start site region 111054	921 bp upstream
Tssr111055	transcription start site region 111055	849 bp upstream
Tssr111056	transcription start site region 111056	664 bp upstream
Tssr111057	transcription start site region 111057	588 bp upstream
Tssr111058	transcription start site region 111058	717 bp downstream