rs27040529 SNP Detail

Summary

• ID
  rs27040529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102248102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGGGCA GGTACCGCCT
  CCTAAGCAGC TCCTTCTGCA CCGGTACCAG GTTAAGCAGA GCTTTTTCTG AAGGGGCGTC
  TGTGGGCGGC AGCACCAGGC TACAGTCCAG AAAGCTCTCC AGAGAGCGCA GCAGCTCCTC
  TCGGTTATGC GCCATGGAGG CGGTAATGCG GAACACCTAC AGAAGGAGAA AGGTCACGAA
  Y
  ACTTACTCTG TAGCCAGGAG GTCCGGGGGA GCAGGGCAAC CTGGTGGTGC CTGCCTGTAG
  TCTTAGCACT CAAGAGGTGG AGATAGGAGG ACTGCCTCAA GTTTGAGGCG ATCCTGGGCT
  ACATAGAGAG AACCGGGTCA GCCAGAGGTA CCAGAGGTAC ATGGTAAAAC ATTGTCTAAA
  AATCTTGAAG TGAGGGTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37280186	NES08547111	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27040529					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280186	NES08547111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102248102 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	within coordinates
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111049	transcription start site region 111049	1134 bp upstream
Tssr111050	transcription start site region 111050	1084 bp upstream
Tssr111051	transcription start site region 111051	1036 bp upstream
Tssr111052	transcription start site region 111052	826 bp upstream
Tssr111053	transcription start site region 111053	770 bp upstream
Tssr111054	transcription start site region 111054	437 bp upstream
Tssr111055	transcription start site region 111055	365 bp upstream
Tssr111056	transcription start site region 111056	180 bp upstream
Tssr111057	transcription start site region 111057	104 bp upstream
Tssr111058	transcription start site region 111058	1201 bp downstream