rs27040530 SNP Detail

Summary

• ID
  rs27040530
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102247799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCAGCCA ACACCTGGGG
  ACTGAGCGCA TCGGTGATGT CACTCAGGTA GTAAGGATAA CGGCGCCGGA TATCACGGAT
  CAGGCCTCCA AAGATCCGGC CTGTGCGCCG TAGAGGGTCG TCTTCGTCAC CAGGGCCCCC
  TTTTCCCCCG TTCAAGTCTG TTGTAGAGGA AAGGAAAATG GTCAGAGGGG CAAATGTCTG
  M
  GAGGAAAGGA GCAGTGTACT GGGGATCCAG GGCCCCATGG GGGAATCAAG AAACCTTGTC
  CGTGTACCTA GAGTGTTGTA CAAGTTGGGG TCTGGCTTGG CGGGGCTGGG CAGGTACCGC
  CTCCTAAGCA GCTCCTTCTG CACCGGTACC AGGTTAAGCA GAGCTTTTTC TGAAGGGGCG
  TCTGTGGGCG GCAGCACCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37280187	NES08547109	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27040530					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280187	NES08547109	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102247799 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	within coordinates
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111049	transcription start site region 111049	831 bp upstream
Tssr111050	transcription start site region 111050	781 bp upstream
Tssr111051	transcription start site region 111051	733 bp upstream
Tssr111052	transcription start site region 111052	523 bp upstream
Tssr111053	transcription start site region 111053	467 bp upstream
Tssr111054	transcription start site region 111054	134 bp upstream
Tssr111055	transcription start site region 111055	62 bp upstream
Tssr111056	transcription start site region 111056	111 bp downstream
Tssr111057	transcription start site region 111057	188 bp downstream
Tssr111058	transcription start site region 111058	1504 bp downstream