rs27040531 SNP Detail

Summary

• ID
  rs27040531
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102247408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAAGGC TTCTTCAAAC
  ACCAGCAGGG GTCCTGAGAA GCCTAGCACA AGCAGGGGCT GTGCCCCCAG GAGAGCAAAG
  AGAATGCCTT GCACTGCTGT GGAGATGAGC AGCTCCGACA CCCCCATCAA GTTCCGGGTC
  TTTTCTCCTG TGGGGGGAAA TGCCATACAG GGATCAAGAT GGAGAGATTA GTTTCGGGGA
  K
  CGAGAGTTAA GTTATGGGGT ATGACCTGCA GAGCATCAGA TTGGTTCAGA AGTGAGGGGG
  CAGAGGCCAG AGGGTTAGAG GTGAATGTTC TGGGCGGGGG GTGTGGCGGG GGGAGAACCA
  TAATTGTCAC TGACCCAGGA GGCCGCCGAA GGTGACGGCA GGTGACAAGG CAGCAAAGTA
  GATGAAGATG ACAGCAGCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37280188	NES08547107	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27040531					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280188	NES08547107	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102247408 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	within coordinates
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111049	transcription start site region 111049	440 bp upstream
Tssr111050	transcription start site region 111050	390 bp upstream
Tssr111051	transcription start site region 111051	342 bp upstream
Tssr111052	transcription start site region 111052	132 bp upstream
Tssr111053	transcription start site region 111053	76 bp upstream
Tssr111054	transcription start site region 111054	246 bp downstream
Tssr111055	transcription start site region 111055	307 bp downstream
Tssr111056	transcription start site region 111056	502 bp downstream
Tssr111057	transcription start site region 111057	579 bp downstream
Tssr111058	transcription start site region 111058	1895 bp downstream