rs27040532 SNP Detail

Summary

• ID
  rs27040532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102246818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTAGTC ACATGATGTG
  TGGCCATAAC CATGAACAAG TATTGAGAGA GGTACCTTCC CTCATATACA GTCAGGCCAT
  GAGCACTGAG TCTCAAGCCT TTACGTGGCC CCAAGAAACC CAGCTGCATA ATCCTAGGTG
  AACCCCAAAA CATACATGTG CCCATGTTCA TGGTTGTGCA AAGAGGCAGA AACATGGCCA
  Y
  AGTCACGCCG TACAGACTTT TTACATAATA ACACACTCTC ACAGACACGC TATGCCTGAG
  TGTTGGCATC CTCCCTGGCC TCACCTTGAT CAGCTTGGAG AAAGTCTCAT AGATGAAGAT
  GAGGGAGATG AGGAAGGAGA AGATCTCCTG GGTGTATCGG GAGATGTATT GGACGAGGAA
  GCTGCCTTCA AAGGCCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37280190	NES08547105	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27040532					SNP	T	T	T	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280190	NES08547105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102246818 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	382 bp proximal
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111048	transcription start site region 111048	1617 bp upstream
Tssr111049	transcription start site region 111049	122 bp downstream
Tssr111050	transcription start site region 111050	174 bp downstream
Tssr111051	transcription start site region 111051	218 bp downstream
Tssr111052	transcription start site region 111052	445 bp downstream
Tssr111053	transcription start site region 111053	502 bp downstream
Tssr111054	transcription start site region 111054	836 bp downstream
Tssr111055	transcription start site region 111055	897 bp downstream
Tssr111056	transcription start site region 111056	1092 bp downstream
Tssr111057	transcription start site region 111057	1169 bp downstream