rs27040533 SNP Detail

Summary

• ID
  rs27040533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102246722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGAGGG CAAGTGCAGG
  AAAGGAGAGG CCTAGGGCTT TCAAAGCATC CACTTCCTCG ATGCACAGGA CTTCCCGGGC
  CATCTCACAT ATAGTACCCA CTAGTCACAT GATGTGTGGC CATAACCATG AACAAGTATT
  GAGAGAGGTA CCTTCCCTCA TATACAGTCA GGCCATGAGC ACTGAGTCTC AAGCCTTTAC
  R
  TGGCCCCAAG AAACCCAGCT GCATAATCCT AGGTGAACCC CAAAACATAC ATGTGCCCAT
  GTTCATGGTT GTGCAAAGAG GCAGAAACAT GGCCATAGTC ACGCCGTACA GACTTTTTAC
  ATAATAACAC ACTCTCACAG ACACGCTATG CCTGAGTGTT GGCATCCTCC CTGGCCTCAC
  CTTGATCAGC TTGGAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37280191	NES08547104	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27040533					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280191	NES08547104	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102246722 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	478 bp proximal
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111048	transcription start site region 111048	1521 bp upstream
Tssr111049	transcription start site region 111049	218 bp downstream
Tssr111050	transcription start site region 111050	270 bp downstream
Tssr111051	transcription start site region 111051	314 bp downstream
Tssr111052	transcription start site region 111052	541 bp downstream
Tssr111053	transcription start site region 111053	598 bp downstream
Tssr111054	transcription start site region 111054	932 bp downstream
Tssr111055	transcription start site region 111055	993 bp downstream
Tssr111056	transcription start site region 111056	1188 bp downstream
Tssr111057	transcription start site region 111057	1265 bp downstream