rs27040534 SNP Detail

Summary

• ID
  rs27040534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102246697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGAGGC AGAGGCCCTG
  TGGGGTTCTG GAGGGCAAGT GCAGGAAAGG AGAGGCCTAG GGCTTTCAAA GCATCCACTT
  CCTCGATGCA CAGGACTTCC CGGGCCATCT CACATATAGT ACCCACTAGT CACATGATGT
  GTGGCCATAA CCATGAACAA GTATTGAGAG AGGTACCTTC CCTCATATAC AGTCAGGCCA
  Y
  GAGCACTGAG TCTCAAGCCT TTACGTGGCC CCAAGAAACC CAGCTGCATA ATCCTAGGTG
  AACCCCAAAA CATACATGTG CCCATGTTCA TGGTTGTGCA AAGAGGCAGA AACATGGCCA
  TAGTCACGCC GTACAGACTT TTTACATAAT AACACACTCT CACAGACACG CTATGCCTGA
  GTGTTGGCAT CCTCCCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37280192	NES08547103	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C		T	T	C	T	C	C	C
ss38739119	mCV24348666	ABI	CRAMUS_MOUSE	f	SNP	C				T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27040534					SNP	C	T	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280192	NES08547103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102246697 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	503 bp proximal
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111048	transcription start site region 111048	1496 bp upstream
Tssr111049	transcription start site region 111049	243 bp downstream
Tssr111050	transcription start site region 111050	295 bp downstream
Tssr111051	transcription start site region 111051	339 bp downstream
Tssr111052	transcription start site region 111052	566 bp downstream
Tssr111053	transcription start site region 111053	623 bp downstream
Tssr111054	transcription start site region 111054	957 bp downstream
Tssr111055	transcription start site region 111055	1018 bp downstream
Tssr111056	transcription start site region 111056	1213 bp downstream
Tssr111057	transcription start site region 111057	1290 bp downstream