rs27040537 SNP Detail

Summary

• ID
  rs27040537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102246592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCTGCC AATCAACAGA
  ATAAGGACAG GCACACACAG GTCACCCTTC TTCCATACAC AGTGCAGATG TGGAGGTGGG
  TGGAGCTCTA TGGGGAGGAG GCAAGTTCTG GAGGCAGAGG CCCTGTGGGG TTCTGGAGGG
  CAAGTGCAGG AAAGGAGAGG CCTAGGGCTT TCAAAGCATC CACTTCCTCG ATGCACAGGA
  Y
  TTCCCGGGCC ATCTCACATA TAGTACCCAC TAGTCACATG ATGTGTGGCC ATAACCATGA
  ACAAGTATTG AGAGAGGTAC CTTCCCTCAT ATACAGTCAG GCCATGAGCA CTGAGTCTCA
  AGCCTTTACG TGGCCCCAAG AAACCCAGCT GCATAATCCT AGGTGAACCC CAAAACATAC
  ATGTGCCCAT GTTCATGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37280195	NES08547100	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	T	C	C	C	C	C	C	C	T
ss38788014	mCV24348654	ABI	CRAMUS_MOUSE	f	SNP		T						C
ss132735922	ENSMUSSNP6215554	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27040537					SNP	C	T	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280195	NES08547100	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102246592 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	608 bp proximal
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111048	transcription start site region 111048	1391 bp upstream
Tssr111049	transcription start site region 111049	348 bp downstream
Tssr111050	transcription start site region 111050	400 bp downstream
Tssr111051	transcription start site region 111051	444 bp downstream
Tssr111052	transcription start site region 111052	671 bp downstream
Tssr111053	transcription start site region 111053	728 bp downstream
Tssr111054	transcription start site region 111054	1062 bp downstream
Tssr111055	transcription start site region 111055	1123 bp downstream
Tssr111056	transcription start site region 111056	1318 bp downstream
Tssr111057	transcription start site region 111057	1395 bp downstream