rs27040538 SNP Detail

Summary

• ID
  rs27040538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102246572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGATCTAC AGAACATAAA
  TGAGCCTGCC AATCAACAGA ATAAGGACAG GCACACACAG GTCACCCTTC TTCCATACAC
  AGTGCAGATG TGGAGGTGGG TGGAGCTCTA TGGGGAGGAG GCAAGTTCTG GAGGCAGAGG
  CCCTGTGGGG TTCTGGAGGG CAAGTGCAGG AAAGGAGAGG CCTAGGGCTT TCAAAGCATC
  Y
  ACTTCCTCGA TGCACAGGAC TTCCCGGGCC ATCTCACATA TAGTACCCAC TAGTCACATG
  ATGTGTGGCC ATAACCATGA ACAAGTATTG AGAGAGGTAC CTTCCCTCAT ATACAGTCAG
  GCCATGAGCA CTGAGTCTCA AGCCTTTACG TGGCCCCAAG AAACCCAGCT GCATAATCCT
  AGGTGAACCC CAAAACATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37280196	NES08547099	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27040538					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280196	NES08547099	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102246572 () rs orientation: forward

Symbol	Name	Function Class
Rr245874	regulatory region 245874	628 bp proximal
Slc4a1	solute carrier family 4 (anion exchanger), member 1	within coordinates
Tssr111048	transcription start site region 111048	1371 bp upstream
Tssr111049	transcription start site region 111049	368 bp downstream
Tssr111050	transcription start site region 111050	420 bp downstream
Tssr111051	transcription start site region 111051	464 bp downstream
Tssr111052	transcription start site region 111052	691 bp downstream
Tssr111053	transcription start site region 111053	748 bp downstream
Tssr111054	transcription start site region 111054	1082 bp downstream
Tssr111055	transcription start site region 111055	1143 bp downstream
Tssr111056	transcription start site region 111056	1338 bp downstream
Tssr111057	transcription start site region 111057	1415 bp downstream