rs27040568 SNP Detail

Summary

• ID
  rs27040568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102211517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGAGCAG CCCGGCAACC
  ACAGATCTAA CCTCCCGTAT TCCACCATCC AGCAAGTCTG GGGAGAAAAG GCCTGGGCGT
  GTGCCGCTTT TTAACCTCCC ACTGCCATCG GTTCTAGTGG TCTTTACCTC CCCTGCTAGT
  GGGCTGAAGG GATATCAGGA TTAGTTGTAG GGAGGCAGAA GGCAATGTGA AGGACGCTGG
  Y
  TTCCACCAGG TCGGCCCACG CTTGGTTTGT GTCATCACTC CCCGGGACAC GCCATGGCTC
  CTGGCTCCTC GGGCTGCCAC AATAACACTG CTGTTGCTCA CATCTCAGCC AGCTGGGTCG
  CACAGTCTCT TTGGACCATT TCTTGGCACA CTGCCTTCTC CATCCACAGT TTCGTTGCTG
  GTGTAATTCC TCTTGTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
ss37280228	NES08547964	PERLEGEN	MM_PANEL2	f	SNP	T		T		T	C	C
ss38817506	mCV23672174	ABI	CRAMUS_MOUSE	f	SNP		C		T
ss132735559	ENSMUSSNP412922	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
rs27040568					SNP	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280228	NES08547964	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102211517 () rs orientation: forward

Symbol	Name	Function Class
C030013E06Rik	RIKEN cDNA C030013E06 gene	within coordinates
Cpgi3917	CpG island 3917	within coordinates
Rr245873	regulatory region 245873	within coordinates
Tssr111032	transcription start site region 111032	1687 bp upstream
Tssr111033	transcription start site region 111033	1586 bp upstream
Tssr111034	transcription start site region 111034	1342 bp upstream
Tssr111035	transcription start site region 111035	1245 bp upstream
Tssr111036	transcription start site region 111036	832 bp upstream
Tssr111037	transcription start site region 111037	413 bp upstream
Ubtf	upstream binding transcription factor, RNA polymerase I	949 bp upstream