rs27040622 SNP Detail

Summary

• ID
  rs27040622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102154492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTTCCC TCCTTTGTGG
  CGTTCTTGCC AGGCCTGGAG CTGGGCTCTC GGGTGTAGTT TACAGTTTGC CTTCCAGGCC
  CCCCATCCTG GGCTGGAAGT GGCACTGTGT ACTTGGCAGC AGGTAGCACC TAAGCATGCC
  CACCTGGTGC AAGCTGCTGC ACCTCTTTAA AGTTGGCTCA CCCAGTAAAG TGGGTTTGAG
  Y
  GCAGCAGCCA CCTTGAGCTG CCTTGGGAAG GGCTGTTGAG GCAAAATGAG CACACAGTAA
  ATAATCGCCG CTGCTCACAG ACAGTGTAAC AGTCGGTAAA GTATTACCAG GGCTGGCTGC
  ATCGCCAGCT TCCCGTAGCA CCACATCTGA CAGCTCCGGG CTGGTCAGAA GCTTGCTCTC
  TCTCTCTCCT CCCTTCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss37280282	NES08548752	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs27040622					SNP	T	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280282	NES08548752	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102154492 () rs orientation: forward

Symbol	Name	Function Class
Hrob	homologous recombination factor with OB-fold	within coordinates
Tssr105201	transcription start site region 105201	1436 bp downstream
Tssr105202	transcription start site region 105202	1414 bp downstream