rs27040647 SNP Detail

Summary

• ID
  rs27040647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102151658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGGTGA CAGGCAGAGC
  TCCCCTGCCT GGTTTCTCTC ACTTCATCTT TTCCTTGTCC CTGGAGGCAA AGGTGTGAAG
  GGGACGTAAA GAGATGCCTT TGGGAACAGG AGTCTCTCTG CTGCCCCTGC TCCAGCCACC
  TGCCAGACGC TGAGTAACAG GACCTAGAGG AGCAGCTGGT TTCCTGGTGA TGCCCGAATG
  Y
  CTGATCACAC AGGCTTGATC ATCTGAGAAG TTAGGAGTCA TTTGAGAACC AGGGCGAGGG
  CTCCCTGGGG GTGGTAGCAG AAAATGATAG AGGGTCACAT CTGCGCCAGG TGGCAATGAA
  GAGAACAGGG AATACAAATG GCTCGTCTGG CGAGCTGGCC CTTGCTCTGA GACTCTGCCT
  CCTGACCTCT GCCTCTACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37280307	NES08548872	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27040647					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37280307	NES08548872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102151658 () rs orientation: forward

Symbol	Name	Function Class
Hrob	homologous recombination factor with OB-fold	within coordinates
Tssr105201	transcription start site region 105201	1389 bp upstream
Tssr105202	transcription start site region 105202	1408 bp upstream