rs27041024 SNP Detail

Summary

• ID
  rs27041024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98661042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGCCGA ATGGTGATTA
  AGGATTCCCA GGTAAAACCC AGATTTTGGG GTAGAATGTC CTTTCCTGGA CAGAAGTCCC
  CACCCCCAGC CTCTAGGAAC ACTGGCTGTC TTTCTCTAGT CCCAATCTTC CAAGGCCCCC
  TCGCTCTCTC CACACTGGCT CCATGCCCTC ACCAGCAGAA CATTCTTGGT GTTGCCTTGC
  Y
  GTAGACTGTT GGCAGGTGCC TCCCCTTCTG GGGCCGAATA TACGTGGGTG GGGCACAGAC
  GGTGCCCATT GCTGTTAGGT TGGTGGCAGC TGTGGTGGGT GGGGCCAGAA GGCCAGGTAG
  GCGGGTAGGA GGAAGGGCCC TGGCGTAGAC CATTCAGCGC TTCATTATGA CGCTGAGCCG
  CCAAAAGGTT GTTGTCGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37289753	NES08557074	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27041024					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289753	NES08557074	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98661042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3768	CpG island 3768	1488 bp distal
Nr1d1	nuclear receptor subfamily 1, group D, member 1	within coordinates
Rr456272	regulatory region 456272	501 bp proximal
Thra	thyroid hormone receptor alpha	1210 bp downstream
Tssr110587	transcription start site region 110587	1979 bp upstream
Tssr110588	transcription start site region 110588	101 bp downstream
Tssr110589	transcription start site region 110589	1904 bp downstream