rs27041025 SNP Detail

Summary

• ID
  rs27041025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98660768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAAAGG TCACGGAAGC
  CTGGGATGTG TTTGGCAAAC TCTACCACCT CCCGAACGGC AGGCGTGAAG CTCATAGAGA
  AGTCTTCCCA GATCTCCTGC ACAGTCCGGC CGCTGCGTCC ATGGGGATAC ATGTTCATGG
  GACATGCCTA AGAGGAGAAT GGAGTAAGGA GGGACATGTT AGCTGGGTGG GCTCCCCAAC
  R
  GGACTGGTTC CAAGTACTGT CTGGGCTAAG AGCTGTGGCC CTTGAGAAGG GGTCTCTCAC
  CTAAATCGGT AATCAGGTGC CGAATGGTGA TTAAGGATTC CCAGGTAAAA CCCAGATTTT
  GGGGTAGAAT GTCCTTTCCT GGACAGAAGT CCCCACCCCC AGCCTCTAGG AACACTGGCT
  GTCTTTCTCT AGTCCCAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37289754	NES08557073	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27041025					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289754	NES08557073	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98660768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3768	CpG island 3768	1214 bp distal
Nr1d1	nuclear receptor subfamily 1, group D, member 1	within coordinates
Rr456272	regulatory region 456272	775 bp proximal
Thra	thyroid hormone receptor alpha	936 bp downstream
Tssr110587	transcription start site region 110587	1705 bp upstream
Tssr110588	transcription start site region 110588	375 bp downstream