rs27041027 SNP Detail

Summary

• ID
  rs27041027
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98660486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTC CAGTCACCAC ACTACTGGGG
  S
  CCTCCCACAG TCAAGAGCAG GGAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37289756	NES08557071	PERLEGEN	MM_PANEL2	f	SNP		C	C	G	G		C		G	C	C	C	G	C
ss38824184	mCV22303957	ABI	CRAMUS_MOUSE	f	SNP	G	C				C		G
ss132705150	ENSMUSSNP355300	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27041027					SNP	G	C	C	G	G	C	C	G	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289756	NES08557071	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98660486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3768	CpG island 3768	932 bp distal
Gm57390	predicted gene, 57390	1913 bp downstream
Nr1d1	nuclear receptor subfamily 1, group D, member 1	within coordinates
Rr456272	regulatory region 456272	1057 bp proximal
Thra	thyroid hormone receptor alpha	654 bp downstream
Tssr110587	transcription start site region 110587	1423 bp upstream
Tssr110588	transcription start site region 110588	657 bp downstream