rs27041030 SNP Detail

Summary

• ID
  rs27041030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98659833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGCTCT CCCGGGCAGA
  AATAGTCGTC TGTGCTTACT TGGTTCATGC TTCTTGTGTG ACACTTCTCG CTGTTTTATA
  ATTAGTCGGG CATGAGTCTG TTTCCCAAGC TAGACTGTGT CTGAATCATG TCTGTAGCCC
  AGTGCCCAGT GCTGGGCCTG GCATAGAGTA GGTTCTCCAT AAAAGGTATG TTGAATTGAA
  Y
  TGCGTGTGCC TCCTCCAGGG TCAGGGGAGA GCTTGGCTCA CCTGCAGAGA CAAGCACCAC
  CGCGGTGAAT AGGCCCAGCT CCTCCTCGGT AAGTGCCAGG GAGTTGAGCT TCTCGCTGAA
  GTCAAACATG GCATTGAGCA GGTCGCCCAT GCCCATGGCA CCGAGCTCCT GCAGACTGTA
  GGTTGTGCGG CTCAGGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37289759	NES08557068	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27041030					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289759	NES08557068	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98659833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3768	CpG island 3768	279 bp distal
Gm57390	predicted gene, 57390	1260 bp downstream
Nr1d1	nuclear receptor subfamily 1, group D, member 1	within coordinates
Rr456272	regulatory region 456272	1710 bp proximal
Thra	thyroid hormone receptor alpha	1 bp downstream
Tssr110587	transcription start site region 110587	770 bp upstream
Tssr110588	transcription start site region 110588	1310 bp downstream