rs27041031 SNP Detail

Summary

• ID
  rs27041031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98659426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG GGGGGCCTCT GCCCTAGAGC
  R
  GGGCCACGCC CACACGCTGG GAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss37289760	NES08557134	PERLEGEN	MM_PANEL2	f	SNP			G	A	G		A	G
ss38722689	mCV22303956	ABI	CRAMUS_MOUSE	f	SNP	A	A	G			A
ss132705146	ENSMUSSNP5104062	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs27041031					SNP	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289760	NES08557134	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98659426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3768	CpG island 3768	within coordinates
Gm57390	predicted gene, 57390	853 bp downstream
Nr1d1	nuclear receptor subfamily 1, group D, member 1	within coordinates
Thra	thyroid hormone receptor alpha	within coordinates
Tssr110587	transcription start site region 110587	363 bp upstream
Tssr110588	transcription start site region 110588	1717 bp downstream