rs27041032 SNP Detail

Summary

• ID
  rs27041032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98657463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACG TGGAAGGCAA
  TGCTTTGCTG TTCCCAGGCA GTGTCCTTTG CCACTGTTCA GGTGTTCCAA CTGGGCAGAG
  GGCCTGGAGG AGCATCTCCT GTCACCTGTG CATGTGCCTG CCCCACTCCT TGGGGCCCCT
  GGGCCACCTG TGCTATCTTC ATCTCTATCT TCTTTTCTCT CTCTCCCGGG GTACTGATTT
  Y
  TGTATTCCTC CAGTCCCATG GATAATACTC TCATACTTCC CTCCCATACC TGGGGACTCA
  GTGGAGTTCC TGACCTGCCT GCTGTCTCCC TTCTTCCCCT GACTCCACTC CCCTCCATTC
  CCATTCTCAG CCATAGGCAT GGCCTCTTAT AGGCACTTGG GAATTCCCCC CTCCCCCCAA
  TCATATGAGC TGTGAGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37289761	NES08557133	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27041032					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289761	NES08557133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98657463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3768	CpG island 3768	1578 bp proximal
Gm57390	predicted gene, 57390	within coordinates
Nr1d1	nuclear receptor subfamily 1, group D, member 1	1295 bp downstream
Rr456271	regulatory region 456271	254 bp distal
Thra	thyroid hormone receptor alpha	within coordinates
Tssr104785	transcription start site region 104785	1615 bp downstream
Tssr104786	transcription start site region 104786	360 bp downstream
Tssr104787	transcription start site region 104787	290 bp downstream
Tssr110587	transcription start site region 110587	1587 bp downstream