rs27041182 SNP Detail

Summary

• ID
  rs27041182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98600521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGCAGTGACT TCTCACGCTC ATCCAGCCCC AGCATCCGGA CGTGGGCCAC
  R
  AGCCAAGCCA CAGCACACAC CGCCAGACTG CATACCTTTC CCTTGATATT           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ
ss37289917	NES08558172	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ
rs27041182					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289917	NES08558172	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98600521 () rs orientation: forward

Symbol	Name	Function Class
Gm22059	predicted gene, 22059	1291 bp downstream
Med24	mediator complex subunit 24	within coordinates
Rr456244	regulatory region 456244	16 bp proximal
Rr456245	regulatory region 456245	894 bp proximal
Tssr110583	transcription start site region 110583	1952 bp upstream
Tssr110584	transcription start site region 110584	1918 bp upstream