rs27041183 SNP Detail

Summary

• ID
  rs27041183
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98600059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGACAC CACCAAGCCC
  CGTGTAGCGG AAGTCCCTGA AGAGCCAGTA CTTGAAATGG TCACCAGGAC AGCTGGGGGT
  GGGGGAGGGA AGCCATAAAA ACTGCAGATG CCTCAGAGTT CCTCGACAGT GACACAGTCA
  CACAATCCCT TTGCTCTCTG GCCTCAGCTA GTTTTCTGGA ACTTGCAGCC TTGGAGGACA
  S
  AGGTCAAGCT GTCTGGGGTC TGTATTTCCC ACGCATGGCA AGTACAGGGA TTAAAACCCT
  CTCGATACAG AGACACACAC CAAACATCTG CTGAGCCAGC TGAGTGAATG TGTGACTAAG
  AATGCGAGGG AGTGGTAGGG GAAGGCGAAG GAGGGAGCGA GAGTCCAACT ACCCTGAATG
  TGCACTGCCT CAGCAGCTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37289918	NES08558171	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27041183					SNP	C	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289918	NES08558171	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98600059 () rs orientation: forward

Symbol	Name	Function Class
Gm22059	predicted gene, 22059	1753 bp downstream
Med24	mediator complex subunit 24	within coordinates
Rr456244	regulatory region 456244	478 bp proximal
Rr456245	regulatory region 456245	1356 bp proximal
Tssr110581	transcription start site region 110581	1651 bp upstream
Tssr110582	transcription start site region 110582	1577 bp upstream
Tssr110583	transcription start site region 110583	1490 bp upstream
Tssr110584	transcription start site region 110584	1456 bp upstream