rs27041184 SNP Detail

Summary

• ID
  rs27041184
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98599764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAAAGC AGGTATTACG
  TAATTCTAGT TATACGAAGT ATCTAGCGTG GCCGCTCAGA AGGACAGAGA GTCGCGTGGT
  AGCTGCCAGG AACTGAGAAG GGGAGGTGGA CAGTTGCTTA TTGGCTAAAA GCTTAGATAC
  ACAAGATGAA AAACGCCTGG AAGTCTGTTT CACAATTCCA ACACGTTTCA TATCCTGAAC
  R
  ATATACATAA ACACGGTTGA AATGGTAAAT TTCCTATTGT GTTTCTTGCC ATATTTAAAA
  ACCAACGGCC AAACAACTTA TCAGTTGGGT GAATAAACAG ACACCACCAA GCCCCGTGTA
  GCGGAAGTCC CTGAAGAGCC AGTACTTGAA ATGGTCACCA GGACAGCTGG GGGTGGGGGA
  GGGAAGCCAT AAAAACTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37289919	NES08558170	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27041184					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289919	NES08558170	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98599764 () rs orientation: forward

Symbol	Name	Function Class
Med24	mediator complex subunit 24	within coordinates
Rr456244	regulatory region 456244	773 bp proximal
Rr456245	regulatory region 456245	1651 bp proximal
Tssr110581	transcription start site region 110581	1356 bp upstream
Tssr110582	transcription start site region 110582	1282 bp upstream
Tssr110583	transcription start site region 110583	1195 bp upstream
Tssr110584	transcription start site region 110584	1161 bp upstream