rs27041185 SNP Detail

Summary

• ID
  rs27041185
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:98599523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGTCCCCT TGAGGGTGGG TTGGGAGCCC CGAGGGGCAT
  GGATATGCCA TGTTACTCAG CCTTAAAAGG AAGGAAATCC GGTCACATGC CAGAGTATGA
  W
  TGAATTTTGA GGAAATTATG CTGAGTAAAG TCCGTCAGTC ATGAAAAAGC AGGTATTACG
  TAATTCTAGT TATACGAAGT ATCTAGCGTG GCCGCTCAGA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37289920	NES08558169	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27041185					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289920	NES08558169	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98599523 () rs orientation: forward

Symbol	Name	Function Class
Med24	mediator complex subunit 24	Intron
Rr456244	regulatory region 456244	1014 bp proximal
Rr456245	regulatory region 456245	1892 bp proximal
Tssr110581	transcription start site region 110581	1115 bp upstream
Tssr110582	transcription start site region 110582	1041 bp upstream
Tssr110583	transcription start site region 110583	954 bp upstream
Tssr110584	transcription start site region 110584	920 bp upstream