rs27041186 SNP Detail

Summary

• ID
  rs27041186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98599018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAATCTAT TCAGACTCTA
  TTCTGTTTCT CCCTCTCCTC CGCCAACTTT TCCCATCCCC CAGGCCCGAG CTCTGCCAAA
  TCAGGGTCAT AAGTAAAACA CAATCACTTC CACTTAAGCT GAGTACTGGG GGGAGGAGGG
  TCTAACCCAG CCCTGGCCTC CGCCCAAAGT ACACTGTAAC TTCCAGGAGA GGCCTTTAGA
  Y
  CGCCCCGCAA GACACTTCCC GGCCCCGGGT AGCTGGGCAA AGTGTGTATA GCCTGGAACC
  CTCTTGGGAA CATCTGGGGC TGTGACCACA GCTGGGGTCT AAGTACCGAG TGCTGGGATG
  TCAGGAGGGC AGGGAAGGCA GCCTTGACTT GCATAGCCCC TCCTCTACCT TCACAAGGGA
  GCTAGGATCC CCACTGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37289921	NES08558168	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27041186					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289921	NES08558168	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98599018 () rs orientation: forward

Symbol	Name	Function Class
Med24	mediator complex subunit 24	within coordinates
Rr456244	regulatory region 456244	1519 bp proximal
Tssr110580	transcription start site region 110580	1622 bp upstream
Tssr110581	transcription start site region 110581	610 bp upstream
Tssr110582	transcription start site region 110582	536 bp upstream
Tssr110583	transcription start site region 110583	449 bp upstream
Tssr110584	transcription start site region 110584	415 bp upstream