rs27041189 SNP Detail

Summary

• ID
  rs27041189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98597341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAGGCA GCTCGTCAGG
  GAGGGGTGAG TCCTAGGCAG GCCCGGGACA CCCCCAGCAC TCACTGGGAC TTGACAGGAT
  GTTGGCATCA TCGTCACTGG AGCTCAGGAG TCGCATCAGC TTCGAGGGCT GCATGTCCTC
  CACGGGGAAG AGGCTGACAT AGTCCTGGGA GACATGGGTC ACTGTCACAT GCCTGACGGC
  Y
  TAGGTCTCCA GGAGCTGGAG AGGACTGGAG GGCAGATCTG ACTGGAGAAG TGAGCTCTCT
  ACAATCCTTG GCCAGCGCTA CCAGTGGTGA CCCCTCCCAT ACCCCAATCT CTGCCCGGTG
  AGCAGAAAAA GACCTCCCCC ATCAAGGACA CTCAGGGGCC CACTCAAGTC TCTCCTCTAG
  ACCCTGACCA ATCAGACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37289925	NES08558164	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27041189					SNP	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289925	NES08558164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98597341 () rs orientation: forward

Symbol	Name	Function Class
Med24	mediator complex subunit 24	within coordinates
Tssr110580	transcription start site region 110580	39 bp downstream
Tssr110581	transcription start site region 110581	1055 bp downstream
Tssr110582	transcription start site region 110582	1130 bp downstream
Tssr110583	transcription start site region 110583	1221 bp downstream
Tssr110584	transcription start site region 110584	1242 bp downstream