rs27041190 SNP Detail

Summary

• ID
  rs27041190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98596829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGCTAA GGGCCTAGCT
  AAGGTCTCAG GTCATAGGTG GGCAACCTAA TCTTTCCTTT ACACAAGCGT GTGGCTCGAA
  CCCTGGTCCC TACAAAGCTC CAGAGAAAGT TCTAGGGTTC AGGAGAAATC TGGAAACAAG
  AGAAATTGGA TGCCACACAA GAGTTTTTGG CAGAAGGAAG TCTGACAGAG GATGACATGG
  R
  CTGCCCTCTG AGTAGGAAGG CGGGAAGGCA GCCCCAGGTT GCAGCCTGGT GGGGCCGGTA
  TTCAGCCACA GGGCATGTCT CTCTGGGTTA GGAAGGAAGG GAGAGGGGGT GAGTCACTAG
  TACAAGCTGG GAACTCACTG GGTGCCTCGC CACCCTTCCA GTGGTGACAA GGGAGGAGCA
  CCTGAGGGGT TTGGAGGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37289926	NES08558163	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27041190					SNP	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289926	NES08558163	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98596829 () rs orientation: forward

Symbol	Name	Function Class
Med24	mediator complex subunit 24	within coordinates
Tssr110580	transcription start site region 110580	551 bp downstream
Tssr110581	transcription start site region 110581	1567 bp downstream
Tssr110582	transcription start site region 110582	1642 bp downstream
Tssr110583	transcription start site region 110583	1733 bp downstream
Tssr110584	transcription start site region 110584	1754 bp downstream