rs27041198 SNP Detail

Summary

• ID
  rs27041198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98594460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGGTTT AGCCCCGGAA
  TTGACTGGAT TCCTTTTTTA GGGCCCTGCT GGCCTGGAAG TTGGAGTGGG GGGCAGAGGA
  GGCAGGAGGA AGCCTGGGGG GGGGGTTGGC ATGGAGGGAG GCCTTCCCAT CCACCCTCAC
  CCTCCACCCC ACCTGTCACT ATAGCCAAGC TTGCGGATAA TAAAGTGTGG TGTTCCAGTA
  Y
  GTGTTTTTTG TCTTCCTTCT TGGTTGGCTA ATGCCTGGCT GGGGGCTGGT GAGTGGCGTG
  GCGTGGTAGG AGAGGACAGA TAAAGAAGGC ACTGGGAGGA GGTGGGATGC TCTAGCTTGC
  CCCGACCTCC TCTGGGTGCC ATTCTCTACT AATCGATAGG GACACTAAAA ATGCCCAGTG
  TCGCTGCCGC CAAGCCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37289934	NES08558155	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27041198					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289934	NES08558155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98594460 () rs orientation: forward

Symbol	Name	Function Class
Csf3	colony stimulating factor 3 (granulocyte)	5 bp downstream
Med24	mediator complex subunit 24	963 bp downstream