rs27041199 SNP Detail

Summary

• ID
  rs27041199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:98593750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCAACT TAACCAACTT
  CCCAGCACTT CCTCACCTCA AGGAAGGACT GATCCCTGAC TTCATCTCCT CCCCACAGAT
  GGAAAACCTA GGGGTGGCCC CTACTGTGCA GCCCACACAG AGCGCCATGC CAGCCTTCAC
  TTCTGCCTTC CAGCGCCGGG CAGGAGGTGT CCTGGCCATT TCGTACCTGC AGGGCTTCCT
  R
  GAGACGGCTC GCCTTGCTCT GCACCACTTG GCCTAGACCT GAGCAGAAAG CCCTTTCCAG
  ATAGTTTATT TATCTCTATT TAATATTTAT GCATATTTAA GCCTACTATT TAAAGACAAA
  GACGAGAAAA TGGAGCTCTA AGCTTCTAGA TCATTCTCTC CACTTCCGAG TTTTGTTCTC
  CTGCTTAGAG CAGAGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37289935	NES08558154	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27041199					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289935	NES08558154	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98593750 () rs orientation: forward

Symbol	Name	Function Class
Csf3	colony stimulating factor 3 (granulocyte)	Coding-Synonymous
Gm38985	predicted gene, 38985	1334 bp upstream
Med24	mediator complex subunit 24	1673 bp downstream
Tssr104772	transcription start site region 104772	1578 bp downstream