rs27041200 SNP Detail

Summary

• ID
  rs27041200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:98593567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGGTCA TGGCAGCACA
  CCTGGGCACC CTGGAAGCTC TCTATATTTT CAGAGGCCTG TTTTTTGGGA AGACACCCCT
  CGCCCCCTAC CCCGCTTCCT CCAGGCTGAG AGACAGACAG ACTCTGTCCA GAGACAGACT
  GGGTTGGAGT CTTGGTCCTA CCGTTAACGT TTAATGAGCC CCACAGGCCA ACTTAACCAA
  Y
  TTCCCAGCAC TTCCTCACCT CAAGGAAGGA CTGATCCCTG ACTTCATCTC CTCCCCACAG
  ATGGAAAACC TAGGGGTGGC CCCTACTGTG CAGCCCACAC AGAGCGCCAT GCCAGCCTTC
  ACTTCTGCCT TCCAGCGCCG GGCAGGAGGT GTCCTGGCCA TTTCGTACCT GCAGGGCTTC
  CTGGAGACGG CTCGCCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37289936	NES08558153	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27041200					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289936	NES08558153	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98593567 () rs orientation: forward

Symbol	Name	Function Class
Csf3	colony stimulating factor 3 (granulocyte)	Intron
Gm38985	predicted gene, 38985	1151 bp upstream
Med24	mediator complex subunit 24	1856 bp downstream
Tssr104772	transcription start site region 104772	1395 bp downstream