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rs27041202 SNP Detail
Summary
  • ID
    rs27041202
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr11:98592610 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCATCCCTGC CTCTGCCCCG
    AAGCTTCCTG CTTAAGTCCC TGGAGCAAGT GAGGAAGATC CAGGCCAGCG GCTCGGTGCT
    GCTGGAGCAG TTGGTGAGTG GGGTTGCCAT AGGTGTGGAG GGAAGGACTT GGGGGGGGTA
    GCGGGGGAGG CAGGAGCACA AATGAGAAGA GGGCAGACTA GGAACACACA GCAGTTGACA
    S
    TGTTTGCCCA GTGTGCACAA GAGCCTAGAT GGCACCCTCA GAATACTGAC AGAAACATTG
    AGGAAGGGAA CATGGGGGGA GAAGGGCACA GGAAAGAGAA TGAGTAGAGA CAGCAGTGGG
    ACCTCTGGAT GGGACAGTCC TTAGGGTCAC TAGGAAGGTA GGGAGCTGAG AAGCCAGGAG
    GACCTGAGCT GGACAAAGAG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37289938 NES08558151 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G C G G C G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27041202 SNP G G G G G G G G G G C G G C G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37289938 NES08558151 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:98592610 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Csf3 colony stimulating factor 3 (granulocyte) Intron
Gm38985 predicted gene, 38985 194 bp upstream
Rr456242 regulatory region 456242 1434 bp distal
Rr456243 regulatory region 456243 1701 bp distal
Tssr104770 transcription start site region 104770 1578 bp downstream
Tssr104771 transcription start site region 104771 1414 bp downstream
Tssr104772 transcription start site region 104772 438 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory