rs27041206 SNP Detail

Summary

• ID
  rs27041206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:98591814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTGGAG GGCTCCCAGA
  AAAGCAGGAG GCAGCCACCA GGAAGCTTAT GGGTCTGAAA AGAGGACAGG TTCTTTCTTC
  TCTCGGGATG TTTGTCCCAG GTATAGGTGA CTTGAGAATC ACAAATGAAG GGCAGAGGGG
  GCTCCCCAAG CACGTCTGCC AGAGGATGGA GAGACAGAAG CAGTCTTGAT CTGAGCACCC
  R
  TTCTTCCCCA GGGTCTGAGT TCCTTGCTAT CCCCTCCAGG GTTTCACCAG CCTTGTTGGA
  CAACTCGGAT CCAGATCCAA CACCCTGCAG CGATTCAGGC CTGGGTGTGG CTGGAAGAGA
  GGAAGAGAGT TTGAGGGGGG GACAAGACGT CAAGGAAGGA ACAGAGATTC CCCGATTTCA
  CAAAAACTTT CGCAAACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37289942	NES08558147	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27041206					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289942	NES08558147	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98591814 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csf3	colony stimulating factor 3 (granulocyte)			Coding-NonSynonymous
				Intron
Gm38985	predicted gene, 38985			within coordinates
Rr456242	regulatory region 456242			638 bp distal
Rr456243	regulatory region 456243			905 bp distal
Tssr104770	transcription start site region 104770			782 bp downstream
Tssr104771	transcription start site region 104771			618 bp downstream
Tssr104772	transcription start site region 104772			354 bp upstream