rs27041207 SNP Detail

Summary

• ID
  rs27041207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:98591325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAGGCAT TTCCCTTTCT
  GGCCCAGTTC ACAGAGGTGA AATCACCAAG GTCTCTTTCA GAGCTAACAC TGGGCAGAGT
  TCTAGGATGG GAGATGCAGC TCCTCCTTTC TCACCTCAGC ATGCATCGAC TCAAGCCAGC
  TCACACCACT GCTACATAAT GAGCAGAGAT CGTCGGGACA CTCCATGACC CAGCCTCCGA
  Y
  GCCCTCCAGA TGCCCCAGAC TCCACGACAT CGAGGTAATG TGCCAAGGGA AGCAGAAAGG
  CAAGGTCAGG TGAGCCAGGA GCCCCAGAGG GTCTTGATTC ATTCAAGACA GACATCCGGT
  TTCCTCTGGC CTCTCTGCCA GGATCCAGGG GCTTAAAGAA ATGAGTCATA ATGGGGGGTA
  TTGGGGAGTT CCCAGCTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss37289943	NES08558146	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs27041207					SNP	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289943	NES08558146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98591325 () rs orientation: forward

Symbol	Name	Function Class
Csf3	colony stimulating factor 3 (granulocyte)	mRNA-UTR
Gm38985	predicted gene, 38985	within coordinates
Rr456242	regulatory region 456242	149 bp distal
Rr456243	regulatory region 456243	416 bp distal
Tssr104770	transcription start site region 104770	293 bp downstream
Tssr104771	transcription start site region 104771	129 bp downstream
Tssr104772	transcription start site region 104772	843 bp upstream