rs27041209 SNP Detail

Summary

• ID
  rs27041209
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98591245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCCTCCTT TTTAGGTAGT
  AATACCCTGT TGGGACTGAG AGCGACTGGG ATGTCCCTCC ATCCCTACTA CCCATGATTG
  GGCAAGGCAT TTCCCTTTCT GGCCCAGTTC ACAGAGGTGA AATCACCAAG GTCTCTTTCA
  GAGCTAACAC TGGGCAGAGT TCTAGGATGG GAGATGCAGC TCCTCCTTTC TCACCTCAGC
  M
  TGCATCGACT CAAGCCAGCT CACACCACTG CTACATAATG AGCAGAGATC GTCGGGACAC
  TCCATGACCC AGCCTCCGAC GCCCTCCAGA TGCCCCAGAC TCCACGACAT CGAGGTAATG
  TGCCAAGGGA AGCAGAAAGG CAAGGTCAGG TGAGCCAGGA GCCCCAGAGG GTCTTGATTC
  ATTCAAGACA GACATCCGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37289945	NES08558144	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C		C	A	C		A
ss323827313	CHEV_11_98561733	CHEVERUD	SCREENING_POP	f	SNP							A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27041209					SNP	A	A	A	A	A	C	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289945	NES08558144	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98591245 () rs orientation: forward

Symbol	Name	Function Class
Csf3	colony stimulating factor 3 (granulocyte)	844 bp upstream
Gm38985	predicted gene, 38985	within coordinates
Rr456242	regulatory region 456242	69 bp distal
Rr456243	regulatory region 456243	336 bp distal
Tssr104770	transcription start site region 104770	213 bp downstream
Tssr104771	transcription start site region 104771	49 bp downstream
Tssr104772	transcription start site region 104772	923 bp upstream