rs27041213 SNP Detail

Summary

• ID
  rs27041213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:98590237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCAGTG ACAATTGTTA
  CACTATGTCG GGGCCCTCAG GGCCCCTCTC TAGCCAGGTC TGGTTCTGAT CCTCCTACCT
  CTATTTCCCA AGTGTTGGGA TGACAGGTGT GTGCCACCAT GCCTGTGTTA TGCAGGGTTA
  GAGATGTAAC CCAGAGCTTT GTCCATGCCA GGCAGGTACT GTATCAGTTA AGCTACATTC
  Y
  GAACGCTGCC CTCCGGTCTT TATTCTCCAC TCTCCGAGGT GCACTCCAGC TGGCTGGTGC
  AATAGAGCAA AGGGGGCTTG TGCAGCTCAT CAAGGCCACC CCTCATCTGC AGCCCACCAA
  TTGGTAGACA GAACAAAATA ATGGCAGCAA AAGATCCCCA CCACCCCCTA CACCGTGGCA
  CTCAGCCTTC CTAATACCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37289949	NES08558253	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27041213					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37289949	NES08558253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98590237 () rs orientation: forward

Symbol	Name	Function Class
Csf3	colony stimulating factor 3 (granulocyte)	1852 bp upstream
Gm38985	predicted gene, 38985	within coordinates
Rr456242	regulatory region 456242	538 bp proximal
Rr456243	regulatory region 456243	651 bp proximal
Tssr104770	transcription start site region 104770	754 bp upstream
Tssr104771	transcription start site region 104771	921 bp upstream
Tssr104772	transcription start site region 104772	1931 bp upstream