rs27041311 SNP Detail

Summary

• ID
  rs27041311
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97099837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATATTC TGGAAACTTA
  TTTCTAAGAG TTAAATGTAT TAGGTCTCAG GCCCTCCACA TGTCTAGAAA TGAGCTCAGG
  TTGGCCTGTA GAAGGATTCC TGGGGATAGA AGCCAGCGTT CCTTGGGAAG CTGTGAACTG
  GGTTTTCTGT CCTCCAAAGG AGCCTTTCTT TGCTTCTGGC AGAGGCACAT GGCTCCTGTG
  S
  TGTGAATGGG TTTGATGACT ATTCCCTCAG TCATCAGAGA ATACAAGTCT TTGGTGGGAT
  TAGAAGGATT AAGAGGGGAA GCATGTCACT GGGGGAAAGT TTTGAGGTTT CAAAAGCCCA
  AGCCAGGCCT AGGGTTGTTG TCTCTCTTAG CCACTGTCTC ATGTTCCCTG CCATAACAAT
  AGCCCAAACC TGGGACACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37293068	NES08568190	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27041311					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37293068	NES08568190	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97099837 () rs orientation: forward

Symbol	Name	Function Class
Npepps	aminopeptidase puromycin sensitive	within coordinates
Rr455697	regulatory region 455697	1215 bp proximal
Rr455698	regulatory region 455698	1442 bp proximal
Tssr110404	transcription start site region 110404	1994 bp upstream